Output exceeds the [size limit]

[chenyangjjj]

Hi, I got the error about making regional locus plot. I am not able to save the regional figure. The below is my code, And is there any arguments for figure units?

Best,Chenyang

sum_AD.plot_mqq(mode="r",region=(8,145058607,145258607), build="19",region_grid=True,anno=True,anno_args={"rotation":0,"fontsize":12}, vcf_path=gl.get_path("1kg_eas_hg19"), mtitle="AD_rs34173062 chr8:145158607", save="/Users/jiangxiaofan/Desktop/GWASlab/test.png", saveargs={"dpi":300,"facecolor":"white"})

error: Output exceeds the size limit. Open the full output data in a text editor--------------------------------------------------------------------------- FileNotFoundError Traceback (most recent call last) Cell In[3], line 2 1 # AD_rs34173062 8:145158607 ----> 2 sum_AD.plot_mqq(mode="r",region=(8,145058607,145258607), 3 build="19",region_grid=True,anno=True,anno_args={"rotation":0,"fontsize":12}, 4 vcf_path=gl.get_path("1kg_eas_hg19"), 5 mtitle="AD_rs34173062 chr8:145158607", 6 save="/Users/jiangxiaofan/Desktop/GWASlab/Manhattan_lh_rh_new.png", 7 saveargs={"dpi":300,"facecolor":"white"}) 9 # Hippocampus_rs34173062 8:145158607 12 sum_Hipp_lh.plot_mqq(mode="r",region=(8,145058607,145258607), 13 build="19",region_grid=True,anno=True,anno_args={"rotation":0,"fontsize":12}, 14 vcf_path=gl.get_path("1kg_eas_hg19"), 15 mtitle="AD_rs34173062 chr8:145158607", 16 save="/Users/jiangxiaofan/Desktop/GWASlab/Manhattan_lh_rh_new.png", 17 saveargs={"dpi":300,"facecolor":"white"})

File ~/Downloads/python/lib/python3.10/site-packages/gwaslab/Sumstats.py:460, in Sumstats.plot_mqq(self, build, **args) 457 if build is None: 458 build = self.meta["gwaslab"]["genome_build"] --> 460 plot = mqqplot(self.data, 461 snpid=snpid, 462 chrom=chrom, 463 pos=pos, ... -> 2428 fp = builtins.open(filename, "w+b") 2430 try: 2431 save_handler(self, fp, filename)

FileNotFoundError: [Errno 2] No such file or directory: '/Users/jiangxiaofan/Desktop/GWASlab/Manhattan_lh_rh_new.png'

[michaelofrancis]

mkdir /Users/jiangxiaofan/Desktop/GWASlab ?

[chenyangjjj]

Yes, that is right. kind ignored. Thanks!