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Cloufield / gwaslab

A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/
GNU General Public License v3.0
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inferring MAF from rsid for specific population #53

Closed chenyangjjj closed 1 year ago

chenyangjjj commented 1 year ago

Hi Yunye,

There is a gwaslab enhancement suggestions: Recently I was doing some co-localization analysis, which required MAF allele frequency. But unfortunately, many studies didn't provide it. Is that possible for gwaslab to include the function "inferring MAF from rsid for specific population" in the future. The solutions on the Internet is very fragmented and out of date.

That would be great if you can consider it.

Best, Chenyang

Cloufield commented 1 year ago

Hi, Chenyang Thanks a lot for the suggestion. I think it is indeed very helpful if gwaslab can infer the allele frequency using references like VCF files with AF information. I will implement this soon.

chenyangjjj commented 1 year ago

Thanks!