Cloufield / gwaslab

A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/
GNU General Public License v3.0
118 stars 22 forks source link

add extra parameters for pysam.tabix_index() #56

Closed gmauro closed 9 months ago

gmauro commented 9 months ago

This PR would like to add the ability to pass additional parameters to the pysam.tabix_index function called by the .to_format function, e.g:

mysumstats.to_format("./test", fmt="vcf", bgzip=True, tabix=True, tabix_indexargs={'csi': True}, build="38")