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Cloufield / gwaslab

A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/
GNU General Public License v3.0
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python version dependencies #77

Closed chenyangjjj closed 8 months ago

chenyangjjj commented 9 months ago

Dear Yunye,

Is there a gwaslab version with loose the version of python dependencies. I want to use it in a multi-site project, while the specific python version requirements seem not friendly for some people.

Best, Chenyang

Cloufield commented 9 months ago

Hi Chenyang,

If it is just python version, you can try pip install --ignore-requires-python gwaslab since gwaslab may work with other python versions but I haven't tested yet. You can test if it works in your pipeline.

If the confilct is caused by some packages, would you please let me know which package exactly? Thanks.

FYI, Current requirments:

dependencies = [
    "pandas>=1.3,!=1.5",
    "numpy>=1.21.2",
    "matplotlib>=3.5,!=3.7.2",
    "seaborn>=0.12",
    "scipy>=1.12",
    "pySAM>=0.18.1,<0.20",
    "Biopython>=1.79",
    "adjustText>=0.7.3, <=0.8",
    "liftover>=1.1.13",
    "scikit-allel>=1.3.5",
    "pyensembl==2.2.3",
    "gtfparse==1.3.0"
]

requires-python = ">=3.9,<=3.10"