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Cloufield / gwaslab

A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/
GNU General Public License v3.0
118 stars 22 forks source link

scikit-allel build issues #78

Closed jonathangriffiths closed 4 months ago

jonathangriffiths commented 4 months ago

I'm having some challenges installing your package because the current build of scikit-allel requires a patch for which the PR hasn't yet been accepted: https://github.com/cggh/scikit-allel/pull/403

This leads to this kind of error:

      ValueError: invalid pyproject.toml config: `project`.
      configuration error: `project` must contain ['name'] properties

Because your package specifies the version of scikit-allel to install, it makes it challenging to use the version supplied by the lovely nostosgenomics.

Could you give any advice on how to navigate this, if you've had these issues yourself?

Thanks!

Cloufield commented 4 months ago

Hi, I haven't had this issue before when installing gwaslab or scikit-allel via pip. Sorry that I may not understand the situation. Could you please describe a little more about how and when you met this error? Thanks!

jonathangriffiths commented 4 months ago

If you've not experienced it, then no problem! It's where I've used poetry to install dependencies of my package - yours is one of those, and scikit-allel is one in turn.

It's not your problem to fix, so I'll close the issue - I just wanted to check!