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Cloufield / gwaslab

A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/
GNU General Public License v3.0
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vcf_path in regional plot #92

Open Sheeya-Dong opened 2 months ago

Sheeya-Dong commented 2 months ago

Hello, I'm having difficulty accessing the file referred to in "vcf_path" to create the regional plot with LD information. Could you please share the "1kg_eur_hg19" file with me or provide a link where I can access it? Thank you!

Cloufield commented 2 months ago

Hi, for the reference files, you can simply type gl.check_available_ref() to check available files and download using keywords like gl.download_ref("1kg_eur_hg19"). You may also manually download them using links in reference.json.

Cloufield commented 2 months ago

BTW, all processed reference files are hosted on Dropbox now.

Sheeya-Dong commented 2 months ago

It works! Thank you very much!