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CoBrALab / MINC-VM

Packer built VMs with minc-toolkit and friends
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brain-view2 Broken? #26

Closed gdevenyi closed 6 years ago

gdevenyi commented 6 years ago

User reports

 'brain-view2: error while loading shared libraries: libbicpl.so.2.0.1: cannot open shared object file: No such file or directory'

minc* commands work.

gdevenyi commented 6 years ago

Looks like the brain-view2 build system is no braindead it can't find libraries it was built against.

Solution is to add minc-toolkit's lib directory to LD_LIBRARY_PATH

bcdarwin commented 6 years ago

A collaborator has also reported this is the case for Pydpiper pipelines, which I suspect is Pyminc also requiring the LD_LIBRARY_PATH set (since it always looks for libraries dynamically).

gdevenyi commented 6 years ago

Latest version has this solved.

gdevenyi commented 6 years ago

Fixed by 599a39a336010ee09a0390fa06204480f16c9bd6