CoBrALab / antsRegistration-MAGeT

A reimplementation of MAGeTbrain using only ANTs tools.
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qbatch error #102

Closed neer86upadhyay closed 3 years ago

neer86upadhyay commented 3 years ago

Dear Gabriel, When we tried running the MAgetbrain on our system MAC mojave 10.14. We got following error in running the qbtach. qbatch: error: local run call returned error code 15 Traceback (most recent call last): File "/Users/Angelika/Documents/Test/Habenula/MAGeTbrain/bin/mb", line 792, in main() File "/Users/Angelika/Documents/Test/Habenula/MAGeTbrain/bin/mb", line 220, in main options.func(options) File "/Users/Angelika/Documents/Test/Habenula/MAGeTbrain/bin/mb", line 329, in command_run p.run() File "/Users/Angelika/Documents/Test/Habenula/MAGeTbrain/bin/mb", line 608, in run self.queue.run(stages=self._get_stage_order()) File "/Users/Angelika/Documents/Test/Habenula/MAGeTbrain/bin/mb", line 539, in run processors=processors) File "/Users/Angelika/Documents/Test/Habenula/MAGeTbrain/bin/mb", line 559, in qbatch opt_afterok, opt_batchsize, opt_walltime), input='\n'.join(commands)) File "/Users/Angelika/Documents/Test/Habenula/MAGeTbrain/bin/mb", line 492, in execute raise Exception("Returns %i :: %s" % (proc.returncode, command)) Exception: Returns 1 :: qbatch --jobname mb_templatelib_2021-03-02T15-20-20 --depend NONE* --chunksize 8 --walltime 6:00:00 -

Plesae have a look and guide us How it can be solved.

Best Wishes, Neeraj

gdevenyi commented 3 years ago

Have you configured your qbatch? What is the output of printenv | grep QBATCH

gdevenyi commented 3 years ago

Please use the proper repository to report issues. https://github.com/CoBrALab/MAGeTbrain