CoBrALab / antsRegistration-MAGeT

A reimplementation of MAGeTbrain using only ANTs tools.
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label resample stage dependency broken #30

Closed steelec closed 8 years ago

steelec commented 8 years ago

csteele@gpc-f102n001-ib0 ~/scratch/magetb_ants_masked_test> vim ~/code/antsRegistration-MAGeT/bin/mb.sh csteele@gpc-f102n001-ib0 ~/scratch/magetb_ants_masked_test> mb.sh Found 5 atlases in input/atlas Found 1 labels in input/atlas Found 4 templates in input/template Found 4 subjects in input/subject Found 0 models in input/models 0 of 4 labels completed Checking dimensions of first atlas High resolution atlas detected, atlas-template registrations will be submitted to 32GB nodes Computing Atlas to Template Registrations 35467688[].gpc-sched-ib0 35467689[].gpc-sched-ib0 35467690[].gpc-sched-ib0 35467691[].gpc-sched-ib0 Computing Template to Subject Registrations 35467693[].gpc-sched-ib0 35467694[].gpc-sched-ib0 35467695[].gpc-sched-ib0 35467696[].gpc-sched-ib0 Computing Label Resamples usage: qbatch [options] qbatch: error: argument command_file: The file 2016-04-12-21:10:25-mb_register_atlas_template* does not exist

steelec commented 8 years ago

also, please fix qbatch --ppj