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CoBrALab / atlases

Segmentations of Neuroanatomy on Hi-Res T1 and T2 MRIs and publicly available population averages in MNI space
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Provide label_names files for processing with improved MAGET label_vols command #2

Closed gdevenyi closed 5 years ago

gdevenyi commented 9 years ago

After implementing an improved label_vols in maget, it would be helpful to provide naming files to automate the header generation

pipitone commented 9 years ago

What does an "improved label_vols" look like?

gdevenyi commented 9 years ago

Doesn't exist yet, will include header generator :)

pipitone commented 9 years ago

Doesn't exist yet, will include header generator :)

Headers for what?

gdevenyi commented 9 years ago

label_vols dumps a header consisting of "label number", if the atlas provides a mapping file (aka we generate one), we can use it so label_vols has names instead

mallarchak commented 9 years ago

I think we can likely insert a new field using minc_modify_header - may not be a difficult process.

mallasr

On Wed, Jan 14, 2015 at 7:44 PM, Gabriel A. Devenyi < notifications@github.com> wrote:

label_vols dumps a header consisting of "label number", if the atlas provides a mapping file (aka we generate one), we can use it so label_vols has names instead

— Reply to this email directly or view it on GitHub https://github.com/CobraLab/atlases/issues/2#issuecomment-70021587.

pipitone commented 9 years ago

I think we can likely insert a new field using minc_modify_header - may not be a difficult process.

Yes! I like that idea. Then a flag on label_vols to pull label names from a referenced atlas.