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CoBrALab / optimized_antsMultivariateTemplateConstruction

A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support
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Running optimized_antsMultivariateTemplateConstruction without a cluster #51

Closed hgellersen closed 2 years ago

hgellersen commented 2 years ago

Hello, I was hoping to use optimized_antsMultivariateTemplateConstruction for one of my research projects but unfortunately, our high-performance computing server does not have a cluster and can therefore not use SLURM/qbatch commands. Is there a way in which optimized_antsMultivariateTemplateConstruction can be used without a cluster? Thanks for any help on this matter.

gdevenyi commented 2 years ago

Hi @hgellersen

This implementation requires a functioning install of https://github.com/pipitone/qbatch, which in turn supports gnu-parallel as a local backend in the case of no cluster.

See the documentation here: https://github.com/CoBrALab/optimized_antsMultivariateTemplateConstruction#requirements

hgellersen commented 2 years ago

Brilliant, I'll give that a try. Thanks so much!