CoBrALab / optimized_antsMultivariateTemplateConstruction

A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support
Other
23 stars 8 forks source link

two-level DBM question #79

Closed araikes closed 1 year ago

araikes commented 1 year ago

Hi @gdevenyi ,

I have a project I'm consulting on for which the two-level DBM approach is worthwhile. I just want to clarify the outputs.

From that pipeline, the second-level resampled DBM outputs give one image for each session/time point that encode the absolute or relative deformation to the subject-specific template. Because they are log-Jacobians, subtraction maps wouldn't be appropriate to get change from timepoint to timepoint but putting those into a statistical engine (SPM, FSL's randomise, PALM, etc) using a repeated measures design matrix would enable modeling the within subject slopes as well as group and time point differences (assuming a group x time experiment).

Is that a correct understanding of the outputs that are produced?

gdevenyi commented 1 year ago

From that pipeline, the second-level resampled DBM outputs give one image for each session/time point that encode the absolute or relative deformation to the subject-specific template.

Correct.

Because they are log-Jacobians, subtraction maps wouldn't be appropriate

I don't know what a subtraction map is.

but putting those into a statistical engine (SPM, FSL's randomise, PALM, etc) using a repeated measures design matrix would enable modeling the within subject slopes as well as group and time point differences (assuming a group x time experiment).

Our typical modelling is linear mixed-effect models within-subject (aka repeat measures) in RMINC.