I got the following failure mode trying to run twolevel_modelbuild.sh with no starting target:
2023-08-11 14:57:45 UTC [ info] Launching modelbuilds for each input row
2023-08-11 14:57:45 UTC [ info] Checking input files
2023-08-11 14:57:45 UTC [ info] Generating initial average of all subjects using mean and center-of-mass alignment
Submitted batch job 17731
Submitted batch job 17732
Submitted batch job 17733
Submitted batch job 17734
cp: cannot stat 'output/firstlevel/subject_1/initialaverage/initialtarget.nii.gz': No such file or directory
2023-08-11 14:57:47 UTC [ failure] /data/foujer/programs/optimized_antsMultivariateTemplateConstruction/modelbuild.sh:script[755] Failed with status 1:
cp -f ${_arg_output_dir}/initialaverage/initialtarget.nii.gz ${_arg_output_dir}/initialtarget.nii.gz
cp -f output/firstlevel/subject_1/initialaverage/initialtarget.nii.gz output/firstlevel/subject_1/initialtarget.nii.gz
2023-08-11 14:57:47 UTC [ failure] /data/foujer/programs/optimized_antsMultivariateTemplateConstruction/twolevel_modelbuild.sh:script[183] Failed with status 1:
${__dir}/modelbuild.sh ${_arg_debug:+--debug} --jobname-prefix "twolevel_${__datetime}_subject_${i}_" ${_arg_leftovers[@]+"${_arg_leftovers[@]}"} --output-dir ${_arg_output_dir}/firstlevel/subject_${i} ${_arg_output_dir}/firstlevel/subject_${i}/input_files.txt
/data/foujer/programs/optimized_antsMultivariateTemplateConstruction/modelbuild.sh --jobname-prefix twolevel_2023-08-11_14-57-45-UTC_subject_1_ --output-dir output/firstlevel/subject_1 output/firstlevel/subject_1/input_files.txt
Environment
Running with ANTs 2.4.4 and minc-toolkit-extras/1.0 in Kubuntu 22.04.
Description
I got the following failure mode trying to run twolevel_modelbuild.sh with no starting target:
Environment
Running with ANTs 2.4.4 and minc-toolkit-extras/1.0 in Kubuntu 22.04.