Closed raihaan closed 9 years ago
Where's my logfiles?
patrai@cicws23:/data/chamal/projects/raihaan/rai_eric/input/subjects/brains$ mincresample CTGlu_ConGlu001_t1.mnc /tmp/resampletest.mnc Transforming slices:HDF5-DIAG: Error detected in HDF5 (1.8.11) thread 0:
major: Dataset
minor: Read failed
major: Dataset
minor: Read failed
major: Low-level I/O
minor: Read failed
major: Data filters
minor: Filter operation failed
major: Data filters
minor: Read failed
major: Data filters
minor: Unable to initialize object
(from miset_coords): Can't read dataset /minc-2.0/image/0/image ........................................................................................................................Done
outputs /tmp/resampletest.mnc, but output file is blank
after some investigation, discovered that mincresample runs properly for a subset of the data set. Certain files were transferred USB, others were transferred from scinet.
mincresample USBtransferfile.mnc out.mnc failed mincresample scinettransferfile.mnc out.mnc passed
Conclusion: A set of files transferred via USB were corrupted
tried a basic mincresample in.mnc out.mnc on an h2f5 file and it crashed. this is in contrast with running mincresample smoothly on a netcdf file.
bug in file/file format? bug in code? due to older minc-toolkit version?