Open raihaan opened 9 years ago
I tried to convert /scratch/m/mchakrav/patelmo6/AA2006D211Dy1_T1.nii
/scratch/m/mchakrav/patelmo6/test.mnc was the output from nii2mnc using chihiro
Some .nii files are awful and broken, nii2mnc doesn't like them.
itk_convert can do it
If an example file is available to share, I can submit a bug upstream to @vfonov
There were changes to mnc2nii and nii2mnc : https://github.com/BIC-MNI/minc-tools/commits/develop/conversion/nifti1 , maybe you happen to have different versions on different systems?
@vfonov The failing version is from minc-toolkit-1.9.10, the succeeding version is from a much older version from the MICe quarantine builder
1.9.10 fails on both SciNet and at the CIC here (one built on ICC on scinet, one built on debian 6.0 gcc)
can you give me the .nii file that causes the crash?
@vfonov Waiting on @raihaan to get permission from the original owner of the file so we can share.
Had an issue running nii2mnc using updated module setup, but was able to run nii2mnc on same file using minc-tools/mice-chihiro
Old style:
Meanwhile: