Implement resample to common space

CoBrALab / twolevel_ants_dbm

A twolevel deformation based morphometry pipeline using ants

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Implement resample to common space #17

Closed gdevenyi closed 4 years ago

gdevenyi commented 5 years ago

Needs

registration of final model to common space target
addition of transforms to stack and resampling of jacobians

gdevenyi commented 5 years ago

Use antsRegistrationSyN.sh

gdevenyi commented 4 years ago

secondlevel_template0.nii.gz is the final population average, need to use that with antsRegistrationSyN.sh and the input of "--resample-to-common-space" to generate a affine/warp pair for common space registration.

If this option is enabled, in addition to generating "resampled" jacobians, also generate "commonspace" jacobians where the common space registration stack is applied on top.

gdevenyi commented 4 years ago

Fixed by #30