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CoBrALab / twolevel_ants_dbm

A twolevel deformation based morphometry pipeline using ants
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ANTs Subprocess Error #58

Closed shlrley closed 3 years ago

shlrley commented 3 years ago

Hi,

I'm running the ANTs procedure on 543 subjects. It has been going well, but I ran into an error where it says that the directory "output/jacobians/resampled/COMPLETE" cannot be found.

It looks like the only directory inside of my output/jacobians directory is one called "overall"

Please see the contents of my-dbm-run-script.sh here: my-dbm-run-script.sh.zip

Here are the contents of dbm_logfile.log: dbm_logfile.log

gdevenyi commented 3 years ago

Please update your copy of twolevel_dbm with git pull and run again.

shlrley commented 3 years ago

It works now, thank you so much!

gdevenyi commented 3 years ago

This was either a random issue or a out-of-order race condition in directory creation. I have moved all the directory creation to the top of the function to avoid this in the future.