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CoExpNetViz / coexpnetviz-python

Internal coexpnetviz CLI used in Cytoscape app
GNU Lesser General Public License v3.0
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Upgrade dependencies #14

Closed timdiels closed 3 years ago

timdiels commented 3 years ago

In GitLab by @timdiels on Apr 4, 2019, 17:52

Consider updating dependencies so long as they don't break the tests

timdiels commented 3 years ago

In GitLab by @timdiels on Apr 4, 2019, 18:34

Current pytest doesn't work with more_itertools==3.* but our pytil wants ==3.*, will have to release a new pytil version which is less restrictive on the version. Perhaps we should specify our deps as ~= or >= instead of pinning to the major version; while still providing a requirements.txt so we know at least one dep configuration for which it works.

timdiels commented 3 years ago

In GitLab by @timdiels on Apr 4, 2019, 18:36

pytil has moved onto to a next major version, we'd need to upgrade to that too then... https://pytil.readthedocs.io/en/latest/changelog.html#id1

timdiels commented 3 years ago

In GitLab by @timdiels on Apr 4, 2019, 18:38

varbio also depends on pytil 6, we'll need a new release for that too; but we need to release a new one of that anyway.

timdiels commented 3 years ago

In GitLab by @timdiels on Apr 4, 2019, 19:11

Hardly any deprecation warnings remained after upgrading everything.

timdiels commented 3 years ago

In GitLab by @timdiels on Apr 5, 2019, 14:27

timdiels commented 3 years ago

In GitLab by @timdiels on Oct 24, 2020, 18:06

mentioned in commit b3e7a6882503dd545f1234dc702175e39b297ee5

timdiels commented 3 years ago

We no longer pin our dependencies (we only require a minimum version and will surely 'discover' the max versions in the future)