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CogComp / CogCompTime

CogCompTime
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how to run it without run it without Gurobi #3

Open TianhaoFu opened 1 year ago

TianhaoFu commented 1 year ago

hi cogcomp, nice repo. I don't have gurobi license but i want use this tool. When i try to directly run it, i came across such problem:

[INFO] Scanning for projects...
[INFO] 
[INFO] ----------------< edu.illinois.cs.cogcomp:CogCompTime >-----------------
[INFO] Building CogCompTime 1.0.0
[INFO] --------------------------------[ jar ]---------------------------------
[WARNING] The POM for edu.illinois.cs.cogcomp:illinois-prepsrl-model:jar:3.1 is invalid, transitive dependencies (if any) will not be available, enable debug logging for more details
[INFO] 
[INFO] --- exec-maven-plugin:3.1.0:java (default-cli) @ CogCompTime ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
Downloading the folder from datastore . . . 
                GroupId: readonly.org.cogcomp.gazetteers
                ArtifactId: 1.6/gazetteers.zip
The target /home/tianhao/.cogcomp-datastore/readonly.org.cogcomp.gazetteers/1.6/gazetteers already exists. Skipping download from the datastore . . . 
Downloading the folder from datastore . . . 
                GroupId: readonly.org.cogcomp.brown-clusters
                ArtifactId: 1.5/brown-clusters.zip
The target /home/tianhao/.cogcomp-datastore/readonly.org.cogcomp.brown-clusters/1.5/brown-clusters already exists. Skipping download from the datastore . . . 
Downloading the folder from datastore . . . 
                GroupId: readonly.edu.illinois.cs.cogcomp.ner
                ArtifactId: 4.0/ner-model-enron-conll-all-data.zip
The target /home/tianhao/.cogcomp-datastore/readonly.edu.illinois.cs.cogcomp.ner/4.0/ner-model-enron-conll-all-data already exists. Skipping download from the datastore . . . 
Model file read from /home/tianhao/.cogcomp-datastore/readonly.edu.illinois.cs.cogcomp.ner/4.0/ner-model-enron-conll-all-data/model/EnronCoNLL.model.level1
Model file read from /home/tianhao/.cogcomp-datastore/readonly.edu.illinois.cs.cogcomp.ner/4.0/ner-model-enron-conll-all-data/model/EnronCoNLL.model.level2
Downloading the file from datastore . . . 
                GroupId: readonly.org.cogcomp.levin.verb.class
                ArtifactId: 1.6/levin-verbClass
File /home/tianhao/.cogcomp-datastore/readonly.org.cogcomp.levin.verb.class/1.6/levin-verbClass already exists. Skipping download from the datastore . . . 
Downloading the folder from datastore . . . 
                GroupId: readonly.org.cogcomp.gazetteers
                ArtifactId: 1.3/gazetteers.zip
The target /home/tianhao/.cogcomp-datastore/readonly.org.cogcomp.gazetteers/1.3/gazetteers already exists. Skipping download from the datastore . . . 
Downloading the folder from datastore . . . 
                GroupId: readonly.org.cogcomp.corelex
                ArtifactId: 1.3/corelex_nouns.zip
The target /home/tianhao/.cogcomp-datastore/readonly.org.cogcomp.corelex/1.3/corelex_nouns already exists. Skipping download from the datastore . . . 
/home/tianhao/.cogcomp-datastore/readonly.org.cogcomp.corelex/1.3/corelex_nouns
Aug 09, 2023 5:05:02 PM net.didion.jwnl.dictionary.MapBackedDictionary doLog
INFO: Loading MapBackedDictionary
Aug 09, 2023 5:05:02 PM net.didion.jwnl.dictionary.MapBackedDictionary doLog
INFO: Loading [POS: noun] [DictionaryFile: index]
Aug 09, 2023 5:05:03 PM net.didion.jwnl.dictionary.MapBackedDictionary doLog
INFO: Loading [POS: verb] [DictionaryFile: index]
Aug 09, 2023 5:05:03 PM net.didion.jwnl.dictionary.MapBackedDictionary doLog
INFO: Loading [POS: adjective] [DictionaryFile: index]
Aug 09, 2023 5:05:03 PM net.didion.jwnl.dictionary.MapBackedDictionary doLog
INFO: Loading [POS: adverb] [DictionaryFile: index]
Aug 09, 2023 5:05:03 PM net.didion.jwnl.dictionary.MapBackedDictionary doLog
INFO: Loading [POS: noun] [DictionaryFile: data]
Aug 09, 2023 5:05:05 PM net.didion.jwnl.dictionary.MapBackedDictionary doLog
INFO: Loading [POS: verb] [DictionaryFile: data]
Aug 09, 2023 5:05:05 PM net.didion.jwnl.dictionary.MapBackedDictionary doLog
INFO: Loading [POS: adjective] [DictionaryFile: data]
Aug 09, 2023 5:05:05 PM net.didion.jwnl.dictionary.MapBackedDictionary doLog
INFO: Loading [POS: adverb] [DictionaryFile: data]
Aug 09, 2023 5:05:05 PM net.didion.jwnl.dictionary.MapBackedDictionary doLog
INFO: Loading [POS: noun] [DictionaryFile: exception]
Aug 09, 2023 5:05:05 PM net.didion.jwnl.dictionary.MapBackedDictionary doLog
INFO: Loading [POS: verb] [DictionaryFile: exception]
Aug 09, 2023 5:05:05 PM net.didion.jwnl.dictionary.MapBackedDictionary doLog
INFO: Loading [POS: adjective] [DictionaryFile: exception]
Aug 09, 2023 5:05:05 PM net.didion.jwnl.dictionary.MapBackedDictionary doLog
INFO: Loading [POS: adverb] [DictionaryFile: exception]
Aug 09, 2023 5:05:05 PM net.didion.jwnl.dictionary.Dictionary doLog
INFO: Installing dictionary net.didion.jwnl.dictionary.MapBackedDictionary@2c235fb8
Downloading the file from datastore . . . 
                GroupId: readonly.org.cogcomp.brown-clusters
                ArtifactId: 1.3/brown-rcv1.clean.tokenized-CoNLL03.txt-c1000-freq1.txt
File /home/tianhao/.cogcomp-datastore/readonly.org.cogcomp.brown-clusters/1.3/brown-rcv1.clean.tokenized-CoNLL03.txt-c1000-freq1.txt already exists. Skipping download from the datastore . . . 
ojAlgo includes a small set of predefined hardware profiles,
none of which were deemed suitable for the hardware you're currently using.
You should set org.ojalgo.OjAlgoUtils.ENVIRONMENT to something that matches the hardware/OS/JVM you're running on.
Additionally it would be appreciated if you contribute your hardware profile to ojAlgo.
https://lists.sourceforge.net/lists/listinfo/ojalgo-user
Model file /home/tianhao/relation_extraction/CogCompTime/models/eventDetector/eventPerceptronDetector_win2_cls0.lc located in a jar file
Model file /home/tianhao/relation_extraction/CogCompTime/models/tempRel/eeTempRelClsBugFix_sent0_labelMode0_clsMode0_win3.lc located in a jar file
Model file /home/tianhao/relation_extraction/CogCompTime/models/tempRel/eeTempRelClsBugFix_sent1_labelMode0_clsMode0_win3.lc located in a jar file
Model file /home/tianhao/relation_extraction/CogCompTime/models/tempRel_ET/etTempRelCls_sent0_labelMode0_clsMode0_win3.lc located in a jar file
Cannot instantiate configuration.

Loading WordNet data and index...
        # of noun synset: 82116
        # of verb synset: 13768
        # of adj synset: 18157
        # of adv synset: 3622
        # of noun: 117798
        # of verb: 11529
        # of adj: 21479
        # of adv: 4481
Done.
[WARNING] 
java.lang.UnsatisfiedLinkError: no GurobiJni65 in java.library.path
    at java.lang.ClassLoader.loadLibrary (ClassLoader.java:1860)
    at java.lang.Runtime.loadLibrary0 (Runtime.java:871)
    at java.lang.System.loadLibrary (System.java:1122)
    at gurobi.GurobiJni.<clinit> (GurobiJni.java:198)
    at gurobi.GRBEnv.<init> (GRBEnv.java:16)
    at gurobi.GRBEnv.<init> (GRBEnv.java:11)
    at edu.illinois.cs.cogcomp.infer.ilp.GurobiHook.<init> (GurobiHook.java:84)
    at edu.illinois.cs.cogcomp.infer.ilp.GurobiHook.<init> (GurobiHook.java:74)
    at edu.illinois.cs.cogcomp.temporal.datastruct.Temporal.TempRelInferenceWrapper.<init> (TempRelInferenceWrapper.java:20)
    at edu.illinois.cs.cogcomp.temporal.TemporalRelationExtractor.TempRelAnnotator.eeTempRelAnnotator (TempRelAnnotator.java:281)
    at edu.illinois.cs.cogcomp.temporal.TemporalRelationExtractor.TempRelAnnotator.annotator (TempRelAnnotator.java:164)
    at edu.illinois.cs.cogcomp.temporal.TemporalRelationExtractor.TempRelAnnotator.rawtext2temprel (TempRelAnnotator.java:448)
    at edu.illinois.cs.cogcomp.temporal.TemporalRelationExtractor.TempRelAnnotator.main (TempRelAnnotator.java:460)
    at org.codehaus.mojo.exec.ExecJavaMojo$1.run (ExecJavaMojo.java:279)
    at java.lang.Thread.run (Thread.java:748)
[WARNING] thread Thread[ForkJoinPool-1-worker-2,5,edu.illinois.cs.cogcomp.temporal.TemporalRelationExtractor.TempRelAnnotator] was interrupted but is still alive after waiting at least 14999msecs
[WARNING] thread Thread[ForkJoinPool-1-worker-2,5,edu.illinois.cs.cogcomp.temporal.TemporalRelationExtractor.TempRelAnnotator] will linger despite being asked to die via interruption
[WARNING] thread Thread[ForkJoinPool-1-worker-11,5,edu.illinois.cs.cogcomp.temporal.TemporalRelationExtractor.TempRelAnnotator] will linger despite being asked to die via interruption
[WARNING] thread Thread[ForkJoinPool-1-worker-4,5,edu.illinois.cs.cogcomp.temporal.TemporalRelationExtractor.TempRelAnnotator] will linger despite being asked to die via interruption
[WARNING] thread Thread[ForkJoinPool-1-worker-6,5,edu.illinois.cs.cogcomp.temporal.TemporalRelationExtractor.TempRelAnnotator] will linger despite being asked to die via interruption
[WARNING] thread Thread[ForkJoinPool-1-worker-15,5,edu.illinois.cs.cogcomp.temporal.TemporalRelationExtractor.TempRelAnnotator] will linger despite being asked to die via interruption
[WARNING] thread Thread[ForkJoinPool-1-worker-8,5,edu.illinois.cs.cogcomp.temporal.TemporalRelationExtractor.TempRelAnnotator] will linger despite being asked to die via interruption
[WARNING] thread Thread[ForkJoinPool-1-worker-1,5,edu.illinois.cs.cogcomp.temporal.TemporalRelationExtractor.TempRelAnnotator] will linger despite being asked to die via interruption
[WARNING] thread Thread[ForkJoinPool-1-worker-10,5,edu.illinois.cs.cogcomp.temporal.TemporalRelationExtractor.TempRelAnnotator] will linger despite being asked to die via interruption
[WARNING] thread Thread[ForkJoinPool-1-worker-3,5,edu.illinois.cs.cogcomp.temporal.TemporalRelationExtractor.TempRelAnnotator] will linger despite being asked to die via interruption
[WARNING] thread Thread[ForkJoinPool-1-worker-12,5,edu.illinois.cs.cogcomp.temporal.TemporalRelationExtractor.TempRelAnnotator] will linger despite being asked to die via interruption
[WARNING] NOTE: 10 thread(s) did not finish despite being asked to via interruption. This is not a problem with exec:java, it is a problem with the running code. Although not serious, it should be remedied.
[WARNING] Couldn't destroy threadgroup org.codehaus.mojo.exec.ExecJavaMojo$IsolatedThreadGroup[name=edu.illinois.cs.cogcomp.temporal.TemporalRelationExtractor.TempRelAnnotator,maxpri=10]
java.lang.IllegalThreadStateException
    at java.lang.ThreadGroup.destroy (ThreadGroup.java:778)
    at org.codehaus.mojo.exec.ExecJavaMojo.execute (ExecJavaMojo.java:319)
    at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo (DefaultBuildPluginManager.java:137)
    at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:210)
    at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:156)
    at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:148)
    at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:117)
    at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:81)
    at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build (SingleThreadedBuilder.java:56)
    at org.apache.maven.lifecycle.internal.LifecycleStarter.execute (LifecycleStarter.java:128)
    at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:305)
    at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:192)
    at org.apache.maven.DefaultMaven.execute (DefaultMaven.java:105)
    at org.apache.maven.cli.MavenCli.execute (MavenCli.java:957)
    at org.apache.maven.cli.MavenCli.doMain (MavenCli.java:289)
    at org.apache.maven.cli.MavenCli.main (MavenCli.java:193)
    at sun.reflect.NativeMethodAccessorImpl.invoke0 (Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke (Method.java:498)
    at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced (Launcher.java:282)
    at org.codehaus.plexus.classworlds.launcher.Launcher.launch (Launcher.java:225)
    at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode (Launcher.java:406)
    at org.codehaus.plexus.classworlds.launcher.Launcher.main (Launcher.java:347)
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time:  01:58 min
[INFO] Finished at: 2023-08-09T17:06:15+08:00
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.codehaus.mojo:exec-maven-plugin:3.1.0:java (default-cli) on project CogCompTime: An exception occurred while executing the Java class. no GurobiJni65 in java.library.path -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException

how to solve it? thanks

@cttsai @mayhewsw @shatu @shyamupa @anjanatiha @HeglerTissot @qiangning