According to reviewer comments, the integration with the BioConductor ecosystem is minimal. They have suggested integrating this with the BioConductor ecosystem using the tidyomics set of packages and classes, which allows for dplyr-like manipulation of native BioConductor data structures.
This is broken down into following sub-tasks:
[ ] Explore the tidyomics documentation for integration with the package
[ ] Evaluate the extent of modification needed for the integration
[ ] Convert the initial data loading to use summarizedExperiment
[ ] Fully integrate the tidyomics data structures into the package
This is one of the tasks for #62
According to reviewer comments, the integration with the BioConductor ecosystem is minimal. They have suggested integrating this with the BioConductor ecosystem using the
tidyomicsset of packages and classes, which allows fordplyr-like manipulation of native BioConductor data structures.This is broken down into following sub-tasks:
tidyomicsdocumentation for integration with the packagesummarizedExperimenttidyomicsdata structures into the package