behr-github
commented
6 years ago Please post wrfbuild.cfg as well. there is something strange going on in there
On Sun, Jun 3, 2018 at 7:24 AM, Xin Zhang notifications@github.com wrote:
This is the log of ./autowrfchem prepinpt:
/nuist/p/work/yinyan/xin/BEHR/AutoWRFChem-R2SMH/BUILD/PREPINPUT/../wrfbuild.cfg: line 5: $'\n': command not found /nuist/p/work/yinyan/xin/BEHR/AutoWRFChem-R2SMH/BUILD/PREPINPUT/../wrfbuild.cfg: line 6: unexpected EOF while looking for matching `"' /nuist/p/work/yinyan/xin/BEHR/AutoWRFChem-R2SMH/BUILD/PREPINPUT/../wrfbuild.cfg: line 7: syntax error: unexpected end of file Pass: All raw met files found Pass: WPS constants file found.
Pass: Found NEI/2011/area4k and NEI/2011/point
Pass: Found lai* files under MEGAN/data.
Pass: MOZBC meets safety check (10 deg buffer around domain, time period checked) Could not find 'grid_fdda' in specified namelist Running WPS... /nuist/p/work/yinyan/xin/BEHR/AutoWRFChem-R2SMH/BUILD/PREPINPUT/../wrfbuild.cfg: line 5: $'\n': command not found /nuist/p/work/yinyan/xin/BEHR/AutoWRFChem-R2SMH/BUILD/PREPINPUT/../wrfbuild.cfg: line 6: unexpected EOF while looking for matching
"' /nuist/p/work/yinyan/xin/BEHR/AutoWRFChem-R2SMH/BUILD/PREPINPUT/../wrfbuild.cfg: line 7: syntax error: unexpected end of file ln: failed to create symbolic link ‘GEOGRID.TBL.BACKUP’: File exists Linking GEOGRID.TBL.ARW_CHEM as GEOGRID.TBL. ln: failed to create symbolic link ‘Vtable.BACKUP’: File exists Running emiss_v04... Running convert_emiss.exe /nuist/p/work/yinyan/xin/BEHR/AutoWRFChem-R2SMH/BUILD/PREPINPUT/bestemissyear.py: Emissions will use year 2011 starting wrf task 0 of 1 real.exe failed with exit code 1 when running the 00-12z period for NEI emissions You should run it directly (with mpirun if compiled in parallel) and check any output to identify the problem Skipping the remainder of convert_emiss Running MEGAN starting wrf task 0 of 1 Running MOZBC... /nuist/p/work/yinyan/xin/BEHR/AutoWRFChem-R2SMH/BUILD/PREPINPUT/../wrfbuild.cfg: line 5: $'\n': command not found /nuist/p/work/yinyan/xin/BEHR/AutoWRFChem-R2SMH/BUILD/PREPINPUT/../wrfbuild.cfg: line 5: $'\n': command not found /nuist/p/work/yinyan/xin/BEHR/AutoWRFChem-R2SMH/BUILD/PREPINPUT/../wrfbuild.cfg: line 6: unexpected EOF while looking for matching"' /nuist/p/work/yinyan/xin/BEHR/AutoWRFChem-R2SMH/BUILD/PREPINPUT/../wrfbuild.cfg: line 7: syntax error: unexpected end of file FB0001.nc Using R2SMH.inp as the input One or both of wrfchemi_00z_d01, wrfchemi_12z_d01 are not present in run directory Aborting MOZBC because previous input preparation steps failed. ............. ..............As you can see, there're errors when preparing NEI emissions. So, I tested real.exe and convert_emiss.exe directly. First, I wrote a test.sh in /WRF/run and it got no errors:
!/bin/bash
./real.exe realexit=$? if [ $realexit -ne 0 ]; then echo "real.exe failed with exit code $realexit when running the 00-12z period for NEI emissions" echo "You should run it directly (with mpirun if compiled in parallel) and check any output to" echo "identify the problem" echo "Skipping the remainder of convert_emiss" exit 1 fi
Then, I checked compile_emi-conv.log which has no error and tested convert_emiss.exe:
..........................
- wrfchemhelp.gsd@noaa.gov *
- *
past opening wrfinput_d01 Time period # 1 to process = 2011-08-30_21:00:00 Time period # 2 to process = 2011-08-30_22:00:00 Time period # 3 to process = 2011-08-30_23:00:00 Time period # 4 to process = 2011-08-31_00:00:00 Time period # 5 to process = 2011-08-31_01:00:00 Time period # 6 to process = 2011-08-31_02:00:00 Time period # 7 to process = 2011-08-31_03:00:00 Time period # 8 to process = 2011-08-31_04:00:00 Time period # 9 to process = 2011-08-31_05:00:00 Time period # 10 to process = 2011-08-31_06:00:00 Time period # 11 to process = 2011-08-31_07:00:00 Time period # 12 to process = 2011-08-31_08:00:00 Time period # 13 to process = 2011-08-31_09:00:00 Time period # 14 to process = 2011-08-31_10:00:00 Time period # 15 to process = 2011-08-31_11:00:00 Time period # 16 to process = 2011-08-31_12:00:00 Time period # 17 to process = 2011-08-31_13:00:00 Time period # 18 to process = 2011-08-31_14:00:00 Time period # 19 to process = 2011-08-31_15:00:00 Time period # 20 to process = 2011-08-31_16:00:00 Time period # 21 to process = 2011-08-31_17:00:00 Time period # 22 to process = 2011-08-31_18:00:00 Time period # 23 to process = 2011-08-31_19:00:00 Time period # 24 to process = 2011-08-31_20:00:00 Time period # 25 to process = 2011-08-31_21:00:00 Total analysis times to input = 25 Total number of times to input = 25 25 forrtl: severe (43): file name specification error, unit 91, file "Unknown" Image PC Routine Line Source convert_emiss.exe 0000000002AB2688 for__io_return Unknown Unknown convert_emiss.exe 0000000002ACD704 for_open Unknown Unknown convert_emiss.exe 000000000041A1E7 Unknown Unknown Unknown convert_emiss.exe 000000000040C9DE Unknown Unknown Unknownlibc-2.17.so 00002AEBC34B2C05 __libc_start_main Unknown Unknown convert_emiss.exe 000000000040C8E9 Unknown Unknown Unknown
Is this related to the difference between namelist.wps and emiss_v04.F? But, emiss_v04.F should read the geographic variables directly from namelist.wps.
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-- Josh Laughner Graduate Student, Cohen Research Lab B47 Hildebrand Hall, Berkeley, CA 94720 jlaughner@berkeley.edu
zxdawn
This is the log of
./autowrfchem prepinpt:As you can see, there're errors when preparing NEI emissions. So, I tested
real.exeandconvert_emiss.exedirectly. First, I wrote atest.shin/WRF/runand it got no errors:Then, I checked
compile_emi-conv.logwhich has noerrorand testedconvert_emiss.exe:Is this related to the difference between namelist.wps and emiss_v04.F? But, emiss_v04.F should read the geographic variables directly from namelist.wps.