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CollasLab / edd

Enriched Domain Detector for ChIP-seq data
https://pypi.python.org/pypi/edd
MIT License
16 stars 4 forks source link

Installation issue with pysam #1

Closed aubinthomas closed 9 years ago

aubinthomas commented 9 years ago

Hello,

I'm trying to install EDD software. I installed all the requirements. But during the installation process I have an error :

Traceback (most recent call last): File "", line 17, in File "/tmp/pip_build_root/edd/setup.py", line 22, in but the installed version was %s. Please upgrade pysam.''' % pysam.version) AttributeError: 'module' object has no attribute 'version' Complete output from command python setup.py egg_info: Traceback (most recent call last):

File "<string>", line 17, in <module>

File "/tmp/pip_build_root/edd/setup.py", line 22, in <module>

but the installed version was %s. Please upgrade pysam.''' % pysam.__version)

AttributeError: 'module' object has no attribute '__version'

Here is the list of the packages I have :

$ pip freeze Cython==0.21.1 Django==1.7.1 Logbook==0.8.0 MACE==1.1 MACS==2.0.9 Mako==0.9.1 Markdown==2.4 MarkupSafe==0.18 PAM==0.4.2 Pillow==2.3.0 Twisted-Core==13.2.0 Twisted-Names==13.2.0 Twisted-Web==13.2.0 apt-xapian-index==0.45 apturl==0.4.1ubuntu4 argparse==1.2.1 bitsets==0.7.8 chardet==2.0.1 colorama==0.2.5 command-not-found==0.3 configglue==1.1.2 debtagshw==0.1 decorator==3.4.0 defer==1.0.6 dirspec==13.10 django-tables2==0.15.0 dnspython==1.11.1 docutils==0.11 duplicity==0.6.23 feedparser==5.1.3 genomes==1.1.0 html5lib==0.999 httplib2==0.8 lockfile==0.8 lxml==3.3.3 matplotlib==1.3.1 miro==4.0.4 mutagen==1.22 numpy==1.9.1 oauthlib==0.6.1 oneconf==0.3.7 panda==0.1.5 pandas==0.15.1 paramiko==1.10.1 patsy==0.3.0 pexpect==3.1 piston-mini-client==0.7.5 protobuf==2.5.0 pyOpenSSL==0.13 pycrypto==2.6.1 pycups==1.9.66 pycurl==7.19.3 pygobject==3.12.0 pyinotify==0.9.4 pyparsing==2.0.1 pysam==0.8.0 pyserial==2.6 pysmbc==1.0.14.1 pysqlite==2.6.3 python-apt==0.9.3.5 python-dateutil==1.5 python-debian==0.1.21-nmu2ubuntu2 python-libtorrent==0.16.13 pytz==2012c pyxdg==0.25 reportlab==3.0 requests==2.2.1 roman==2.0.0 rpy==1.0.3 scipy==0.14.0 sessioninstaller==0.0.0 setuptools-git==1.0b1 six==1.5.2 statsmodels==0.6.0 system-service==0.1.6 textile==2.1.5 track==1.3.0-dev uTidylib==0.2 urllib3==1.7.1 vboxapi==1.0 wsgiref==0.1.2 zope.interface==4.0.5

I'm working on Linux Mint 17, but I have exactly the same issue on Debian Wheezy (7.7)

Thanks in advance

eivindgl commented 9 years ago

Hi, Sorry for this very late reply. I have completely overlooked this message and I saw it just now by accident. I have just updated EDD and hopefully fixed your problem as well. If it is still interesting. all the best, eivind