zhangshuli-stu
commented
2 years ago hello, do you solve the problem? I also have the same problem and do not know how to solve. If it is convenient, could you please help me? I will be very grateful.
Open Mingsenli opened 3 years ago
zhangshuli-stu
commented
2 years ago hello, do you solve the problem? I also have the same problem and do not know how to solve. If it is convenient, could you please help me? I will be very grateful.
Mingsenli
commented
2 years ago I am so sorry. I also do not solve this problem. ------------------ Original ------------------ From: @.>; Date: Sat, Jan 8, 2022 11:15 AM To: @.>; Cc: @.>; @.>; Subject: Re: [CollasLab/edd] AttributeError: 'module' object has no attribute 'version' (#17)
hello, do you solve the problem? I also have the same problem and do not know how to solve. If it is convenient, could you please help me? I will be very grateful.
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zhangshuli-stu
commented
2 years ago Thank you very much! Best wishes!
At 2022-01-22 17:42:05, "Mingsenli" @.***> wrote:
I am so sorry. I also do not solve this problem. ------------------ Original ------------------ From: @.>; Date: Sat, Jan 8, 2022 11:15 AM To: @.>; Cc: @.>; @.>; Subject: Re: [CollasLab/edd] AttributeError: 'module' object has no attribute 'version' (#17)
hello, do you solve the problem? I also have the same problem and do not know how to solve. If it is convenient, could you please help me? I will be very grateful.
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dmalzl
commented
2 years ago As far as my investigation went I found that it is actually not EDD that is causing the problem but rather statsmodels which apparently is incompatible with python 2.7 from it 0.11 version (also see here). Thus, I would say a quick solution might be getting an older version of statsmodels (like 0.10)
zhangshuli-stu
commented
2 years ago Thank you very much, I have found the statsmodels==0.6.1 can work well.
At 2022-02-13 17:03:06, "Daniel Malzl" @.***> wrote:
As far as my investigation went I found that it is actually not EDD that is causing the problem but rather statsmodels which apparently is incompatible with python 2.7 from it 0.11 version (also see here). Thus, I would say a quick solution might be getting an older version of statsmodels (like 0.10)
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Mingsenli
commented
2 years ago Thank you for helping to solve this problem. Your help has brought me great convenience. ------------------ Original ------------------ From: @.>; Date: Mon, Feb 14, 2022 09:31 AM To: @.>; Cc: @.>; @.>; Subject: Re: [CollasLab/edd] AttributeError: 'module' object has no attribute 'version' (#17)
Thank you very much, I have found the statsmodels==0.6.1 can work well.
At 2022-02-13 17:03:06, "Daniel Malzl" @.***> wrote:
As far as my investigation went I found that it is actually not EDD that is causing the problem but rather statsmodels which apparently is incompatible with python 2.7 from it 0.11 version (also see here). Thus, I would say a quick solution might be getting an older version of statsmodels (like 0.10)
— Reply to this email directly, view it on GitHub, or unsubscribe. Triage notifications on the go with GitHub Mobile for iOS or Android. You are receiving this because you commented.Message ID: @.> — Reply to this email directly, view it on GitHub, or unsubscribe. Triage notifications on the go with GitHub Mobile for iOS or Android. You are receiving this because you authored the thread.Message ID: @.>
zhangshuli-stu
commented
2 years ago No thanks, I am very glad to help you.
Best regard, Shuli
At 2022-03-07 11:31:40, "Mingsenli" @.***> wrote:
Thank you for helping to solve this problem. Your help has brought me great convenience. ------------------ Original ------------------ From: @.>; Date: Mon, Feb 14, 2022 09:31 AM To: @.>; Cc: @.>; @.>; Subject: Re: [CollasLab/edd] AttributeError: 'module' object has no attribute 'version' (#17)
Thank you very much, I have found the statsmodels==0.6.1 can work well.
At 2022-02-13 17:03:06, "Daniel Malzl" @.***> wrote:
As far as my investigation went I found that it is actually not EDD that is causing the problem but rather statsmodels which apparently is incompatible with python 2.7 from it 0.11 version (also see here). Thus, I would say a quick solution might be getting an older version of statsmodels (like 0.10)
— Reply to this email directly, view it on GitHub, or unsubscribe. Triage notifications on the go with GitHub Mobile for iOS or Android. You are receiving this because you commented.Message ID: @.> — Reply to this email directly, view it on GitHub, or unsubscribe. Triage notifications on the go with GitHub Mobile for iOS or Android. You are receiving this because you authored the thread.Message ID: @.>
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Hello, edd is an useful tool, and i really need it. Thank you for your contribution and sharing.
When i run edd, the following error was made. How can i solve this problem? As a beginner, i hope to get a detailed solution. Looking forward to your reply. Thank you.
edd --write-log-ratios --write-bin-scores \ chrNameLength.txt hg19.blacklist.merge.bed \ H3K9me2_ab.rmdup.bam input.rmdup.bam H3K9me2_ab
Traceback (most recent call last): File "/data/User/limingsen/.conda/envs/EDD/bin/edd", line 133, in
import eddlib.experiment
File "/data/User/limingsen/.conda/envs/EDD/lib/python2.7/site-packages/eddlib/experiment.py", line 18, in
import logit
File "/data/User/limingsen/.conda/envs/EDD/lib/python2.7/site-packages/eddlib/logit.py", line 3, in
from statsmodels.stats.proportion import proportion_confint
File "/data/User/limingsen/.conda/envs/EDD/lib/python2.7/site-packages/statsmodels/stats/init.py", line 1, in
from statsmodels.tools._testing import PytestTester
File "/data/User/limingsen/.conda/envs/EDD/lib/python2.7/site-packages/statsmodels/tools/init.py", line 1, in
from .tools import add_constant, categorical
File "/data/User/limingsen/.conda/envs/EDD/lib/python2.7/site-packages/statsmodels/tools/tools.py", line 8, in
from statsmodels.compat.python import lzip, lmap
File "/data/User/limingsen/.conda/envs/EDD/lib/python2.7/site-packages/statsmodels/compat/init.py", line 1, in
from statsmodels.tools._testing import PytestTester
File "/data/User/limingsen/.conda/envs/EDD/lib/python2.7/site-packages/statsmodels/tools/_testing.py", line 11, in
from statsmodels.compat.pandas import assert_equal
File "/data/User/limingsen/.conda/envs/EDD/lib/python2.7/site-packages/statsmodels/compat/pandas.py", line 4, in
import numpy as np
File "/data/User/limingsen/.conda/envs/EDD/lib/python2.7/site-packages/statsmodels/compat/numpy.py", line 46, in
NP_LT_114 = LooseVersion(np.version) < LooseVersion('1.14')
AttributeError: 'module' object has no attribute 'version'