Open StrohD opened 6 months ago
As many users seem to face similar problems with installing EDD with correct dependencies, I want to share the order and versions that I used to make it run on a Ubuntu machine.
conda create -n edd conda activate edd conda install python=2.7 conda install pip pip install Cython==0.29.32 numpy==1.16.6 pip install scipy==1.2.3 pip install statsmodels==0.10.2 pip install pybedtools==0.8.2 pip install pysam==0.11.2.2 pip install edd conda install bioconda::bedtools==2.31.1 edd -v > edd 1.1.19
Props to https://github.com/rabdill !
(edd) user@machine:~$ conda list # packages in environment at /home/user/miniconda3/envs/edd: # # Name Version Build Channel _libgcc_mutex 0.1 conda_forge conda-forge _openmp_mutex 4.5 2_gnu conda-forge bzip2 1.0.8 hd590300_5 conda-forge ca-certificates 2024.2.2 hbcca054_0 conda-forge certifi 2019.11.28 py27h8c360ce_1 conda-forge cython 0.29.32 pypi_0 pypi edd 1.1.19 pypi_0 pypi ld_impl_linux-64 2.40 h41732ed_0 conda-forge libexpat 2.5.0 hcb278e6_1 conda-forge libffi 3.4.2 h7f98852_5 conda-forge libgcc-ng 13.2.0 h807b86a_5 conda-forge libgomp 13.2.0 h807b86a_5 conda-forge libnsl 2.0.1 hd590300_0 conda-forge libsqlite 3.45.1 h2797004_0 conda-forge libuuid 2.38.1 h0b41bf4_0 conda-forge libxcrypt 4.4.36 hd590300_1 conda-forge libzlib 1.2.13 hd590300_5 conda-forge logbook 1.5.3 pypi_0 pypi ncurses 6.4 h59595ed_2 conda-forge numpy 1.16.6 pypi_0 pypi openssl 3.2.1 hd590300_0 conda-forge pandas 0.24.2 pypi_0 pypi patsy 0.5.6 pypi_0 pypi pip 20.1.1 pyh9f0ad1d_0 conda-forge pybedtools 0.8.2 pypi_0 pypi pysam 0.11.2.2 pypi_0 pypi python 2.7.18 h42bf7aa_3 python-dateutil 2.8.2 pypi_0 pypi python_abi 2.7 1_cp27mu conda-forge pytz 2024.1 pypi_0 pypi readline 8.2 h8228510_1 conda-forge scipy 1.2.3 pypi_0 pypi setuptools 44.0.0 py27_0 conda-forge six 1.16.0 pypi_0 pypi sqlite 3.45.1 h2c6b66d_0 conda-forge statsmodels 0.10.2 pypi_0 pypi tk 8.6.13 noxft_h4845f30_101 conda-forge tzdata 2024a h0c530f3_0 conda-forge wheel 0.37.1 pyhd8ed1ab_0 conda-forge xz 5.2.6 h166bdaf_0 conda-forge zlib 1.2.13 hd590300_5 conda-forge
As many users seem to face similar problems with installing EDD with correct dependencies, I want to share the order and versions that I used to make it run on a Ubuntu machine.
Props to https://github.com/rabdill !