Added code to create specific output folder for each test

Collective-Logic-Lab / Synthetic-RNA-maps

Creating synthetic RNA expression data to test control kernel ideas

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Closed AyLaggs closed 2 months ago

AyLaggs commented 8 months ago

Added code to create a specific output folder for each test using arguments such as the number of simulations and name of the gene network

bcdaniels commented 8 months ago

Great—looks good to me!

AyLaggs commented 7 months ago

Added a new method of visualization instead of TSNE, and changed the integration time step size from 0.01 to 0.001.

AyLaggs commented 6 months ago

Fixed the problem of not being able to run the code with Cell Collective Networks.

AyLaggs commented 5 months ago

Created the README file and added comments to all Python and Shell scripts