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Collective-Logic-Lab / Synthetic-RNA-maps

Creating synthetic RNA expression data to test control kernel ideas
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Naming issues #3

Open bcdaniels opened 1 month ago

bcdaniels commented 1 month ago

We need to update network_modifier.py to put Cell Collective (and maybe other) network files into a format that BoolODE will recognize. In particular, BoolODE does not like underscores in gene names.

bcdaniels commented 1 month ago

Also note that running BoolODE in parallel currently hides error messages, making it harder to debug these issues.