DX: activate Ruff formatting and linting in Jupyter Lab

[redeboer]

Closes #48

• 22622f6 updates lock file so that the next commits clearly show the changes to all dependencies
• 828c85c, 87451bb, fac0cae, and bd1d74d remove redundant direct dependencies (that is, the packages that are imported in notebooks)
• ac458d4 and 87e98fd address the Ruff linting errors found in Jupyter Lab. For some reason, the Ruff pre-commit hook does not find these. I assume this is because that hook deactivates some rules for Jupyter notebooks by default, while the `python-lsp-ruff

[redeboer]

@shenvitor could you check if Ruff works for you in Jupyter Lab if you follow the new instructions in https://github.com/ComPWA/compwa.github.io/pull/287?