Closed IllDepence closed 1 year ago
tested with export of
Category:Investigation
Carbon_dioxide_reduction_via_light_activation_of_a_ruthenium–Ni(cyclam)_complex/Table_1
but didn’t result in a
properly resulted in same_as
relation<owl:equivalentClass rdf:resource="http://purl.obolibrary.org/obo/OBI_0000066"/>
in the export
(Side note: @kkthek , the addition of the equivalent URI
was yet another victim of the WikiImport-Script)
note: same_as
for instance level, on schema level:
https://www.w3.org/TR/owl-ref/#equivalentClass-def https://www.w3.org/TR/owl-ref/#equivalentProperty-def
Tested for column headers (with demo purl URLs)
Investigation properties are defined:
Photocatalytic_CO2_conversion_experiments
{{{field|catalyst|property=Catalyst [...]
{{{field|pH|property=PH value [...]
Properties have equivalent URLs set:
Property:Catalyst
[[equivalent URI:=https://purl.org/tema/000893]]
Property:PH_value
[[equivalent URI:=https://purl.org/tema/000124]]
tested with
Category:Investigation
http://chemwiki.scc.kit.edu/main/mediawiki/Property:Catalyst
http://chemwiki.scc.kit.edu/main/mediawiki/Property:PH_value
http://chemwiki.scc.kit.edu/main/mediawiki/Category:Photocatalytic_CO2_conversion_experiments
Carbon_dioxide_reduction_via_light_activation_of_a_ruthenium–Ni(cyclam)_complex/Table_1
but equivalentProperty relations don’t show up in RDF exports
The special property needed to be activated first in LocalSettings.php. It's called "Equivalent URI", try again with:
[[Equivalent URI::https://purl.org/tema/000124]]
for Categories it already worked with :=
and equivalent
(see comment above)
tested now for properties with
::
instead of :=
Equivalent
instead of equivalent
but didn’t work
tested by putting
Category:Investigation
http://chemwiki.scc.kit.edu/main/mediawiki/Property:Catalyst
http://chemwiki.scc.kit.edu/main/mediawiki/Property:PH_value
http://chemwiki.scc.kit.edu/main/mediawiki/Category:Photocatalytic_CO2_conversion_experiments
Carbon_dioxide_reduction_via_light_activation_of_a_ruthenium–Ni(cyclam)_complex/Table_1
in the export field and looking for the purl URLs in the output
Meeting notes:
equivalent_property
links in RDF exports, do we need to define properties which are defined to take values from the classes found in Ontologies? If so: where/how to define? Can ranges (and domains) be defined for SMW Property pages?not supported in SMW: Domain and range restrictions
@IllDepence: update: we can use the special property "Imported from" to have the desired behaviour.
http://some.url.org/|[http://some.url.org/ Friendly name of this vocabulary]
trivialname|Type:Text
[[Category:Imported vocabulary]]
[[Imported from::<kürzel>:trivialname]]
Added
Chebi with content
http://purl.obolibrary.org/obo/chebi.owl|http://purl.obolibrary.org/obo/chebi.owl Chemical Entities of Biological Interest]
catalyst|Type:Page
[[Category:Imported vocabulary]]
and to Catalyst
[[Imported from::chebi:catalyst]]
results in RDF export with test input from here
<chebi:catalyst rdf:resource="http://chemwiki.scc.kit.edu/main/mediawiki/Special:URIResolver/Molecule-3A100630"/>
[...]
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/chebi.owlcatalyst"/>
since in the output above http://purl.obolibrary.org/obo/chebi.owlcatalyst
doesn’t make sense, I changed the URL from
http://purl.obolibrary.org/obo/chebi.owl
to
http://purl.obolibrary.org/obo/
and the catalyst
to CHEBI_35223
, s.t. in the RDF the URL ends up being
http://purl.obolibrary.org/obo/CHEBI_35223
which properly redirects to https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:35223
side note: https://www.ebi.ac.uk/chebi/searchId.do?chebiId=
and CHEBI:35223
as URL and property name can’t be used b/c a colon followed by a number leads to an error in the RDF export
I added the page for the vocabulary "chebi", "MediaWiki:Smw import chebi" to the repo
Vocabularies chmo and ncit were added to the wiki, "MediaWiki:Smw import chmo", "MediaWiki:Smw import ncit"
updated the pages in the repo. Added two categories: "Molecular process" and "Assay" which are used in investigations. @CNChem: pls add the required "imported from"-annotations to these 2 categories.
Added two more vocabularies: MOP OBI
Added imported from to Molecular Process Assay Investigation
Set type for those categories to page, is this correct?
yes. added it also to the repository.
My current understanding based on this paper (see Table 1 and 2):
[[equivalent URI:=http://purl.obolibrary.org/obo/OBI_0000066]]
(OBI:0000066 (investigation))Open questions
Is the information reflected as✔same_as
relations in RDF exports?