All the vignettes should be using Covid-19-relevant parameters. Rather than redefining them each time, I think it would be better to creating a function like covid_transmission_parameters(variant="base", age_structured=FALSE) which returns:
list(kappa, gamma, mu)
where gamma and mu are either numbers or vectors dependent on whether the model is age-structured. The documentation would contain references to where these parameters come from.
Also, by allowing the parameters to be variant-specific, we could be clear about which variant we are examining.
All the vignettes should be using Covid-19-relevant parameters. Rather than redefining them each time, I think it would be better to creating a function like
covid_transmission_parameters(variant="base", age_structured=FALSE)
which returns:list(kappa, gamma, mu)
where
gamma
andmu
are either numbers or vectors dependent on whether the model is age-structured. The documentation would contain references to where these parameters come from.Also, by allowing the parameters to be variant-specific, we could be clear about which variant we are examining.