ezASCAT::prep_ascat object 'loci' not found

CompEpigen / ezASCAT

Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R

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Open fuzhiliang opened 1 year ago

fuzhiliang commented 1 year ago

What is the loci for this module？

PoisonAlien commented 1 year ago

Hi, try here with maftools. Its the same code base with improvements. It should work.

fuzhiliang commented 1 year ago

Hi， The prepAscat.R script in maftools also has the loci variable

bounlu commented 1 month ago

@fuzhiliang Loci files are here.