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CompEpigen / figeno

Tool for plotting sequencing data along genomic coordinates.
GNU General Public License v3.0
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chr #14

Closed wangzhaohui-001 closed 2 months ago

wangzhaohui-001 commented 2 months ago

Hello, My reference information is not like "chr_axis", so how to set ? Thank you 1 ![Uploading 微信图片_20240612100247.png…]()

e-sollier commented 2 months ago

Hi,

Sorry, I cannot open the image that you tried to upload and I don't understand your question. Could you please try to re-upload the image and reformulate your question?

wangzhaohui-001 commented 2 months ago

My question is the reference genome of my research species chromosome name is not like "chr_axis". I want know if i can use this tool.

e-sollier commented 2 months ago

I still don't really understand. Figeno should work with any reference genome. You will just need to provide a file for the genes annotation of your reference if you want to show genes, and a cytobands file if you want to show a chromosome ideogream. See: https://figeno.readthedocs.io/en/latest/content/describe_figure.html#general