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CompEpigen
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methrix
An R :package: for fast and flexible DNA methylation analysis
https://www.bioconductor.org/packages/release/bioc/html/methrix.html
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High memory usage with read_bedgraph
#32
jamespeapen
opened
1 day ago
1
PCA plotting error
#31
questcof
closed
1 month ago
5
Using get_region_summary with very large methrix object
#30
richardheery
closed
1 month ago
2
Update write_bedgraphs.R
#29
maurerv
closed
2 years ago
1
functions to calculate hydroxymethylation (using WGBS and WGoxBS)
#28
ClarissaFeuersteinAkgoz
opened
3 years ago
0
Error using HDF5 backend
#27
pangjli
closed
3 years ago
4
Bug when exporting bsseq objects from methrix objects created using Methyldackel pipeline
#26
Christian-Heyer
closed
3 years ago
1
remove_snps() - Error in h(simpleError(msg, call))
#25
YoannPa
closed
3 years ago
7
Bioconductor devel version error
#24
PoisonAlien
closed
4 years ago
1
Track annotation is missing when bedGraphs are exported
#23
lutsik
closed
4 years ago
3
Show which CpGs are missing when loading bedGraphs
#22
lutsik
closed
4 years ago
1
Super big
#21
rnbatra
closed
4 years ago
5
Update write_bedgraphs.Rd
#20
ClarissaFeuersteinAkgoz
closed
4 years ago
2
added the argument for SeqlevelsStyle and trackline in bedgraph
#19
ClarissaFeuersteinAkgoz
closed
4 years ago
1
added trackline in bedgraph and the argument for SeqlevelsStyle
#18
ClarissaFeuersteinAkgoz
closed
4 years ago
2
Subsetting samples will not allow report generation when recal_stats=T
#17
ClarissaFeuersteinAkgoz
closed
4 years ago
2
Display issue of plot legend titles in Methrix report
#16
YoannPa
closed
1 month ago
0
get_region_summary() and sample names with "_"
#15
ClarissaFeuersteinAkgoz
closed
4 years ago
1
plot_coverage; error in selection of random subset
#14
ClarissaFeuersteinAkgoz
closed
4 years ago
1
Error in methrix report with subsetted methrix object
#13
ClarissaFeuersteinAkgoz
closed
3 years ago
1
Wrong image in methrix_report: Chromosome-wise depth of coverage
#12
ClarissaFeuersteinAkgoz
closed
4 years ago
1
bedGraph/bigWig export function would be of much use
#11
lutsik
closed
3 years ago
2
PC labels in the PCA plot are wrong
#10
lutsik
closed
4 years ago
1
Error while summarising regions
#9
lutsik
closed
3 years ago
5
Error while removing uncovered CpGs
#8
lutsik
closed
5 years ago
1
Error while masking CpGs based on coverage
#7
lutsik
closed
5 years ago
1
Typos in diagnostic messages when extracting CpGs
#6
lutsik
closed
5 years ago
3
Typo in the documentation
#5
ClarissaFeuerstein
closed
5 years ago
1
Missing x and y axis labels
#4
ClarissaFeuerstein
closed
1 month ago
0
Chromosome-wise plots have wrong ordering
#3
lutsik
closed
5 years ago
1
Suggestions for example dataset
#2
PoisonAlien
closed
3 years ago
2
Import of the bed files should be more generic
#1
lutsik
closed
3 years ago
3