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CompEvol / beast2

Bayesian Evolutionary Analysis by Sampling Trees
www.beast2.org
GNU Lesser General Public License v2.1
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*BEAST + phylogeography has taxa missing #7

Closed tgvaughan closed 7 years ago

tgvaughan commented 10 years ago

What steps will reproduce the problem?

  1. start *BEAST analysis
  2. add phylogeography trait

    What is the expected output? What do you see instead?

Expected to be able to specify location for taxa. There is only a single dummy taxon. Needs to make all taxa in species tree available.

rbouckaert commented 7 years ago

If no taxon set is defined for the species tree, the phylogeography trait has no taxa to specify locations for. I don't think it is reasonable for the geography model to guess these taxa. If between step 1 and 2 the taxon set is specified in the taxonset panel, this is no problem any more.