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CompSynBioLab-KoreaUniv / FunGAP

FunGAP: fungal Genome Annotation Pipeline
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get_augustus_species.py not downloading anything. #61

Closed Rob-murphys closed 3 years ago

Rob-murphys commented 3 years ago

When giving the get_augustus_species.py script either the genus of my genome or the closest Augustus model nothing gets downloaded and i get this as output:


get_augustus_species.py --genus_name termitomyces --email_address <some_email>

Validating input genus name...

===
Taxon: termitomyces
Rank: genus
Lineage: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Agaricales; Lyophyllaceae
===

Suggestions:
We found them in order level: Agaricales
coprinus_cinereus
laccaria_bicolor

Am I doing something wrong here?

mbnmbn00 commented 3 years ago

Hello,

That's expected behavior!! It doesn't download anything but suggests which Augustus parameter you will use. So you will put either "coprinus_cinereus" or "laccaria_bicolor" in your parameter.