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ComparativeGenomicsToolkit / Comparative-Annotation-Toolkit

Apache License 2.0
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transMapPsl doesn't show base mismatches in browser #319

Open diekhans opened 2 months ago

diekhans commented 2 months ago

This is because the query sequences has not been added to the bigPsl

also it would be good to to turn on these options by default: Draw double horizontal lines when both genome and query have an insertion Draw a vertical purple line for an insertion at the beginning or end of the query, orange for insertion in the middle of the query

diekhans commented 2 months ago

also, would be good to include source id information in transmap PSL

diekhans commented 2 months ago

for some reason, the query deletion lines don't show even when you turn them on. We need to investigate this. might be a browser bug.