Pangenome graphs with only Structural Variants

ComparativeGenomicsToolkit / cactus

Official home of genome aligner based upon notion of Cactus graphs

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Pangenome graphs with only Structural Variants #1166

Closed gsc74 closed 1 year ago

gsc74 commented 1 year ago

@glennhickey Is it possible to generate a pangenome graph with only SVs while retaining W lines? The pangenome graph generated by minigraph lacks W lines.

glennhickey commented 1 year ago

Nope

gsc74 commented 1 year ago

Thanks!