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ComparativeGenomicsToolkit / cactus

Official home of genome aligner based upon notion of Cactus graphs
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make sure all references in final gfa header #1175

Closed glennhickey closed 1 year ago

glennhickey commented 1 year ago

This is a hack that double checks the header of the merged GFA and makes sure that any sample passed in via --reference appears in it. It fixes the case where samples get dropped due to not being present in the first merged chromosome.

Resolves #1172