ComparativeGenomicsToolkit / cactus

Official home of genome aligner based upon notion of Cactus graphs
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Publish SA Hackathon Tutorial #1240

Closed glennhickey closed 11 months ago

glennhickey commented 11 months ago

Adds a link to this material that shows an example on how to make a HPRC subset pangenome (4 samples) then use it for read mapping and genotyping. It should work on a 32-core 256-gig system (over a span of a few days).

This was lurking in a branch during the hackathon, but I think it could serve as a useful example for others so there's no reason not to make it available in the main documentation..