Way back when, I switched from outputting xg/gbwt to gbz, in order to keep consistent with vg giraffe's interface.
But there's been a number of times recently where I've wanted an xg (with all paths) for debugging with vg chunk and vg find. So this PR adds an --xg option to output a whole-genome xg with all paths, as converted from the .gbz (ie with chopped nodes). It only works in conjunction with --gbz.
Way back when, I switched from outputting
xg/gbwttogbz, in order to keep consistent withvg giraffe's interface.But there's been a number of times recently where I've wanted an
xg(with all paths) for debugging withvg chunkandvg find. So this PR adds an--xgoption to output a whole-genome xg with all paths, as converted from the.gbz(ie with chopped nodes). It only works in conjunction with--gbz.