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ComparativeGenomicsToolkit / cactus

Official home of genome aligner based upon notion of Cactus graphs
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Visualize results #1284

Open gubrins opened 6 months ago

gubrins commented 6 months ago

Hi all,

It may be a silly question, but how can I visualize my results after obtaining my hal file and convert it to both maf and bigmaf? Is there any special visualization tool? I did not manage to find any.

Thanks in advance!

glennhickey commented 6 months ago

You view it on the UCSC genome browser by making a track for it then importing it as a track hub. See some information here about making a track

https://genome.ucsc.edu/goldenPath/help/bigMaf.html