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ComparativeGenomicsToolkit / cactus

Official home of genome aligner based upon notion of Cactus graphs
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repeat masked genomes #1313

Closed eead-csic-compbio closed 6 months ago

eead-csic-compbio commented 6 months ago

Hi, does minigraph-cactus support chromosomes with hard-masked sequences? Thanks

glennhickey commented 6 months ago

Yeah, it'll run but you'll get much better results with unmasked data.