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ComparativeGenomicsToolkit / cactus

Official home of genome aligner based upon notion of Cactus graphs
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vcf location problem in Minigraph catus #1407

Open jwli-code opened 5 months ago

jwli-code commented 5 months ago

How do I know the result of minigraph-cactus output vcf, the corresponding position on the reference genome is in the corresponding position of the respective genome

glennhickey commented 5 months ago

That information is not included in the VCF. You can map coordinates with hal, xg or odgi outputs.