hello , i do the Minigraph-Cactus successfully and get the file of gfa ,but when i want to use the "pangenome-growth" to get picture,
do this :grep '^P' hprc-v1.0-mc-grch38.gfa | cut -f2 | grep -ie 'grch38' > hprc-v1.0-mc-grch38.paths.grch38.txt.
my code grep '^P' pangenome.gfa.gz | cut -f2 | grep -ie 'che' > paths.txt
and i my result is zero
i found it maybe the file of gfa is not exit the "path"?
-can you help me ?thank you so much!!!
my file like this
the example like this
hello , i do the Minigraph-Cactus successfully and get the file of gfa ,but when i want to use the "pangenome-growth" to get picture, do this :
grep '^P' hprc-v1.0-mc-grch38.gfa | cut -f2 | grep -ie 'grch38' > hprc-v1.0-mc-grch38.paths.grch38.txt. my codegrep '^P' pangenome.gfa.gz | cut -f2 | grep -ie 'che' > paths.txt