Good afternoon!
I'm sorry to bother you.
I created a test sequence containing many problematic points to see how the program will handle them.
The last deletion and insertion in my graph is for some reason split into SNPs. I cam see it when visualize in bandage. I have tried changing different flag values, but nothing changes. Can you tell me what I should pay attention to or is it to go in the configuration in the mapping settings?
Good afternoon! I'm sorry to bother you. I created a test sequence containing many problematic points to see how the program will handle them. The last deletion and insertion in my graph is for some reason split into SNPs. I cam see it when visualize in bandage. I have tried changing different flag values, but nothing changes. Can you tell me what I should pay attention to or is it to go in the configuration in the mapping settings?