ComparativeGenomicsToolkit / cactus

Official home of genome aligner based upon notion of Cactus graphs
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read input data (listed in seqfile) from local directory, not web location (url)? #1456

Closed bhdobrin closed 3 months ago

bhdobrin commented 3 months ago

My input fasta files are not web-accessible without a login, and I do not have a means of hosting them myself at a web-accessible location. I do not see a flag or option that would instruct the minigraph-cactus to read input file addresses (second column of the seqfile) as local directory locations. Is there such an option, or will the program interpret local addresses (provided without a url) as local?

glennhickey commented 3 months ago

yes, local paths are supported.

bhdobrin commented 3 months ago

Thanks.