PBS PRO - workflow

[fgualdr]

Hi, I am trying to execute Cactus on a set of custom newick+genome files (assembled similar to the example). I am working on an HPC cluster with PBS PRO and not SLURM is there any way to execute the required steps. I need to do whole genome interspecies alignment to make HAL files and downstream generate MAFs and Phylo tracks (in wiggle format).

Thanks in advance

Francesco

[glennhickey]

Cactus only supports slurm. You should be able to submit a Cactus job to run on a single node of your cluster though.