Closed jwli-code closed 2 months ago
singularity exec -B ${PWD}:${PWD} ${PWD}/cactus_v2.9.0.sif cactus-pangenome ${PWD}/js ${PWD}/$seq --outDir ${PWD}/xxx.pg --outName xxx-pg --reference xxx --vcf --giraffe --gfa --gbz --maxCores $cpu --permissiveContigFilter
How do I change it to a command that runs through the gpu so that I can submit tasks on the slurm system
Please read https://github.com/ComparativeGenomicsToolkit/cactus/blob/master/doc/progressive.md#clusters-and-containers
glennhickey
commented
2 months ago glennhickey
commented
2 months ago
singularity exec -B ${PWD}:${PWD} ${PWD}/cactus_v2.9.0.sif cactus-pangenome ${PWD}/js ${PWD}/$seq --outDir ${PWD}/xxx.pg --outName xxx-pg --reference xxx --vcf --giraffe --gfa --gbz --maxCores $cpu --permissiveContigFilterHow do I change it to a command that runs through the gpu so that I can submit tasks on the slurm system