ComparativeGenomicsToolkit / cactus

Official home of genome aligner based upon notion of Cactus graphs
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switch to patched vg to fix paths -n #1506

Closed glennhickey closed 4 weeks ago

glennhickey commented 1 month ago

vg paths -n (path normalization) is now a default part of minigraph-cactus. but on certain graphs, it can take a really long time. I'm still not sure why, but it's simple enough to patch by switching to the older snarls api. This PR updates cactus to use a vg version containing this patch.