search

ComparativeGenomicsToolkit / cactus

Official home of genome aligner based upon notion of Cactus graphs
Other
526 stars 111 forks source link

cactus-hal2chains keep the best match #1519

Open lyt57 opened 2 weeks ago

lyt57 commented 2 weeks ago

Hello, I would like to ask if there is any parameter that can keep only the best match when I use cactus-hal2chains like ：--dupeMode singel in cactus-hal2maf

glennhickey commented 2 weeks ago

You can try --useHalSynteny -- but I'm not sure if it guarantees only one match.

lyt57 commented 2 weeks ago

Thank you! I'll try it!