Do input assemblies need to be masked?

ComparativeGenomicsToolkit / cactus

Official home of genome aligner based upon notion of Cactus graphs

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Closed IsaacDiaz026 closed 1 year ago

IsaacDiaz026 commented 1 year ago

Do I need to softmask the input assemblies?

glennhickey commented 1 year ago

Yes for Progressive Cactus. No for the pangenome pipeline.